Rodriguez_2013_TIGS_StressGenes.pdf

Worms under stress: C. elegans stress response and its relevance to complex human disease and aging Miriam Rodriguez1, L. Basten Snoek1, Mario De Bono2, and Jan E. Kammenga1

1 Laboratory of Nematology, Wageningen University, 6708 PD, Wageningen, The Netherlands

2 Cell Biology Division, Medical Research Council, Laboratory of Molecular Biology, Cambridge CB2 2QH, UK

Review

Glossary

Amyloid precursor protein: precursor of amyloid, that accumulates as plaques

in brain neurons in Alzheimer’s disease.

Apoptosis: genetically determined process of programmed cellular death.

Molecular chaperones: a diverse group of proteins prevent and correct

intracellular folding and assembly of polypeptides.

Orthologous: two genes are to be orthologous if they diverged after a

speciation event

P53: the gene encoding p53 is a tumor suppressor gene; its activity stops the

formation of tumors.

Many organisms have stress response pathways, com- ponents of which share homology with players in com- plex human disease pathways. Research on stress response in the nematode worm Caenorhabditis ele- gans has provided detailed insights into the genetic and molecular mechanisms underlying complex human diseases. In this review we focus on four different types of environmental stress responses – heat shock, oxida- tive stress, hypoxia, and osmotic stress – and on how these can be used to study the genetics of complex human diseases. All four types of responses involve the genetic machineries that underlie a number of com- plex human diseases such as cancer and neurodegener- ative diseases, including Alzheimer’s and Parkinson’s. We highlight the types of stress response experiments required to detect the genes and pathways underlying human disease and suggest that studying stress biology in worms can be translated to understanding human disease and provide potential targets for drug discovery.

C. elegans as a model for complex human disease and aging Since its introduction in the early 1970s [1], the nematode C. elegans (Nematoda: Rhabditidae) has been instrumen- tal as a platform for biological research and the implemen- tation of a vast array of technologies [2,3]. The tiny and transparent worm has been used extensively in many areas of genetics, developmental and evolutionary biology, and complex disease research [4–6]. C. elegans serves as an important model for human diseases because it has many biological features in common with humans, such as the development of muscles, nerves, and digestive tract and the production of sperm and eggs [7]. Although relatively short-lived (approximately 3 weeks), worms do age, and studying this process has been informative for understand- ing human aging [8]. Many signaling pathways underlying lifespan elongation, apoptosis (see Glossary), and complex behaviors are conserved between worms and mammals [9–11]. Most notable is the insulin/insulin-like growth factor (IGF) signaling pathway, which involves the forkhead transcription factor DAF-16, a key regulator of

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� 2013 Elsevier Ltd. All rights reserved. http://dx.doi.org/10.1016/j.tig.2013.01.010

Corresponding author: Kammenga, J.E. ([email protected]). Keywords: C. elegans; daf-16; hsf-1; complex human disease.

lifespan changes in response to environmental and gonadal stimuli [8].

C. elegans has received much attention as a model for complex human diseases, including cancer, neurodegener- ative, and mitochondrial disease [12–15]. It is also an effective model species for studying complex human neu- rological diseases [11]. Moreover, C. elegans has orthologs of amyloid precursor protein, suggesting worms may be a good model for studying Alzheimer’s disease [16]. A specific example of a finding from worms that has been successfully translated into an improvement in human health comes from studies on the kindlin protein family. Mutations in one member of this family, Kindlin-1, lead to Kindler syndrome in humans, which is characterized by skin blis- tering. The defect in Kindler patients suggested a role of Kindlin-1 in integrin adhesion, but it was in C. elegans that the interaction between UNC-112, the ortholog of mam- malian kindlins, and integrin was demonstrated [17]. This discovery paved the way to the development of more efficient therapy for this rare disease, and it demonstrates the relevance of using C. elegans to understand human disease.

C. elegans stress pathways as a model for complex disease pathways in humans Many common stress-induced effects on physiology, gene expression, and signaling pathways among animals, in- cluding C. elegans and mammals, have been found [18]. For instance, heat-shock experiments showed that the genes hsf-1 and daf-16 are part of the heat-shock response and affect lifespan in C. elegans [19]. Homologs of these genes

PolyQ: polyglutamine (PolyQ) repeats are implicated in several neurodegen-

erative diseases, such as Huntington’s disease.

Proteostasis: protein homeostasis in cells.

von Hippel–Lindau tumor suppressor protein: a protein which regulates gene

expression and tumor growth.

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play a key role in the development of age-related diseases in humans [20]. Lack of oxygen induces the transcription factor HIF-1 in C. elegans, which protects the germline from apoptosis by antagonizing the function of CEP-1, the homolog of the human tumor suppressor p53 [21]. Studying these effects in C. elegans with mutations in genes that have human homologs [e.g., daf-18 is the homolog of the human tumor suppressor PTEN and daf-16 is the ortholog of human FOXO (Forkhead transcription factor)] provides a tractable genetic system to explore the stress response and its relation to disease in humans.

Here we review how C. elegans pathways and genes underlying the stress response to heat shock, oxidative stress, hypoxia, and osmotic stress can inform research on complex human disease pathways. The type of experi- ments and methods used in C. elegans to study the genetics of stress responses are described in Box 1. Table 1 shows which type of stress experiments are used to identify and characterize genes in C. elegans, their human homologs, and the types of disease with which these genes are asso- ciated.

Hitherto, stress response studies in C. elegans have mainly been conducted from the view of understanding the genetics of longevity, neurobiology, and developmental biology. However, stress in worms affects genes and path- ways that share a high homology with humans and play an important role in various complex diseases. Because our knowledge of both the genetics of human disease and stress response in worms has increased, it is now possible to draw comparisons between worms and humans that may sug- gest new avenues for research or illuminate previously unknown connections in complex human diseases. There- fore, we recommend continuing to study stress biology in

Box 1. Methods used for stress response experiments in C. elega

Heat shock

For heat-shock assays, NGM plates with OP50 are preheated to 35 8C prior to placing young adult hermaphrodites (stage L4) onto the

plates. Worms are exposed to 35 8C for 2 h after which the plates are returned to 20 8C. Animals are scored as dead when they fail to respond to prodding with a platinum wire [52,70].

Oxidative stress

Oxidative stress assays are performed using strongly oxidizing agents

such as the herbicide paraquat. Age-synchronized young adult (24 h

post-larval stage L4) worms are grown on nematode growth medium

(NGM) agar seeded with bacteria E. coli OP50 (20 8C). The animals are transferred into 300 ml of M9 + 200 mM paraquat (in 24-well plates, six

animals per well) and scored for survival at 20 8C every 30 min [52,55]. Paraquat resistance can also be measured [71]. Worms are exposed

as 3-day old adults, in groups of 30, to varying concentrations of

paraquat (0–85 mM) in liquid survival medium at 20 8C. Medium with paraquat was replaced daily, and the number of live worms was

counted after 3 days of exposure.

Oxidative stress can also be measured using the hydrogen peroxide

resistance assay [71]. Worms aged 5 days are sampled in replicate

groups of 50 adult worms and washed in magnesium-free M9

medium, after which they are incubated for 4 h at 20 8C with 4– 12 mM H2O2. Viability was scored as described above.

OxICAT is a quantitative redox proteomics technique for in vivo

monitoring of global changes in redox environment by quantifying

oxidative thiol modifications of proteins. Synchronized populations

of C. elegans are lyzed with 10% trichloracetic acid (TCA). After

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the worm with an eye towards understanding complex diseases in humans.

Heat shock Following a heat shock all cells exhibit a heat-shock re- sponse, which is a program of stress-inducible gene expres- sion, to prevent cellular degeneration and increase thermal tolerance. The heat-shock response has been well studied in C. elegans, revealing the involvement of three neuroen- docrine signaling pathways [22]: the nuclear hormone receptor (NR) pathway, the transforming growth factor-b (TGF-b) pathway, and the IGF/insulin-like signaling (ILS) pathway, which is the most thoroughly studied. The ILS pathway is involved in elongating lifespan by regulating the entry of the transcription factors DAF-16 and heat- shock factor-1 (HSF-1) into the nucleus. Starting with the receptor DAF-2, the ILS pathway consists of chained phos- phorylation that, in normal conditions, keeps DAF-16 and HSF-1 cytoplasmic and inactive. Conversely, in stress conditions this pathway promotes the dephosphorylation of these factors, allowing their entry into the nucleus and, in consequence, their transcription factor activity [23]. HSF-1 regulates the heat-shock response by controlling the expression of small heat-shock proteins (HSP), which are molecular chaperones that function to maintain cellu- lar proteostasis in eukaryotes and prevent protein and cellular damage following stress [24]. For instance HSF- 1 and HSP protect C. elegans from heat-stroke-associated neurodegeneration [25].

Recent studies have demonstrated that both DAF-16 and HSF-1 are required for lifespan extension mediated by ILS, but DAF-16 acts during nematode adulthood, whereas HSF-1 is more active during early development in larva

ns

lysis, proteins are precipitated, washed, resuspended, and in vivo

reduced and oxidized thiols are labeled by thiol-reactive isotope-

coded affinity tag (ICAT). HPLC then is used to separate the ICAT-

labeled peptides, followed by mass spectrometry and tandem

mass spectrometry to identify the thiol-peptides and quantify their

oxidation status. In parallel, stable transgenic lines expressing the

peroxide sensor HyPer were generated to monitor endogenous

peroxide levels over the lifespan of C. elegans. About 30 worms of

different stages of synchronized populations were analyzed for

HyPer ratio. To avoid pH changes that might modify HyPer ratio in

transitional stage from larva to adult stage, release of peroxide

was monitored using the peroxide-specific Amplex UltraRed

reagent [72].

Osmotic stress

Age-synchronized young adult worms (L4) are transferred from

isotonic (50 mM NaCl NGM) to non-lethal hypertonic medium

(200 mM NaCl NGM). To assess both acute and chronic responses

to hypertonicity, exposure times are: 15 min, 1 h, 6 h, and one full

generation of growth (96 h) [53].

Hypoxia

Worms are grown at 20 8C on standard NGM plates seeded with OP50 E. coli. For hypoxia, animals are kept in a hypoxia chamber (C-174

chamber, Biospherix) for 24 h at 20 8C and recovered in ambient oxygen for 12 h at 20 8C. The oxygen level is automatically maintained with an oxygen controller (ProOx P110, Biospherix) supplied with

compressed nitrogen gas [73].

Table 1. Types of stress experiments to identify and characterize genes in C. elegans, their human homologs, and the types of disease with which these genes are associated

Stress C. elegans gene Human homolog/ortholog Disease Refs

Heat daf-18 PTEN Cancer [74,75]

Heat-shock daf-16 FOXO3A Cancer [28]

Heat-shock hsf-1 HSF1 Cancer [24,76]

Oxidative pink-1 PINK1 Parkinson’s [38]

Oxidative lrk-1 LRRK2 Parkinson’s [38]

Oxidative sod-1, -2, -3 SOD1, 2, 3 Amyotrophic lateral sclerosis (ALS) [77–79]

Hyperoxia gcy-35 NPR-3 Skeletal overgrowth [80,81]

Hypoxia hif-1 HIF Ischemia, cancer [45,48,82,83]

Hypoxia vhl-1 VHL Cancer [84]

Hypoxia egl-9 EGLN Cancer [45]

Hypoxia/heat-shock cep-1 P53 Cancer [21]

Osmotic gpdh-1 GPD1 Transient infantile hypertriglyceridemia [52,85]

Osmotic elt-2, elt-3 GATA4–6 Pancreatic agenesis and cardiac defects [86,87]

Osmotic osm-12 BBS7 Bardet–Biedl syndrome [53]

Osmotic/oxidative/heat-shock skn-1 NFE2 (and others) [52]

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stages [26]. It appeared that the activity of HSF-1 is regulated at an early step by ILS via two HSF-1 regulators, DDL-1 and DDL-2 (daf-16-dependent longevity genes) [27]. Inhibition of DDL-1/2 increases longevity and thermoto- lerance. DDL-1/2 negatively regulate HSF-1 activity by forming a protein complex with HSF-1 which is affected by the phosphorylation status of DDL-1 (homologous to human coiled-coil domain-containing protein 53). The for- mation of the protein complex and the phosphorylation of DDL-1 are controlled by ILS [27].

DAF-16 and HSF-1 play an important role in aging and age-related disease in humans. DAF-16 is orthologous to human FOXO3A, which has been shown to be strongly associated with human longevity [28]. A number of other aging phenotypes, such as the prevalence of cancer and cardiovascular disease and loss of various physical and cognitive functions, are also associated with the FOXO3A genotype [28]. This is supported by many other studies showing that polymorphisms in FOXO3A are associated with the ability to reach a very old age in humans [29]. In addition to its effects on aging, there is much evidence that the insulin/IGF-1 signaling (IIS) pathway (the human equivalent of ILS in worms) is a major regulatory axis underlying cancer in humans [30]. The IIS pathway can induce cellular proliferation in both healthy conditions and cancer [31].

As in worms, HSF1 also plays an essential role in stress responses by maintaining proteostasis in humans through regulation of insulin signaling and other age-related path- ways [20]. The ability of HSF to bind to DNA is inhibited by acetylation at Lys80 [32], which is regulated by the de- acetylase SIRT1. SIRT1 regulates cell survival (apoptosis mechanism), inflammation, and metabolism through stress activation by de-acetylation of different factors such as p53, NF-kB, and different FOXO family members. Severe stress-mediated activation of SIRT1 likely leads to negative regulation of p53 [33] and subsequent cancer formation. A recent study demonstrates that HSF1 also regulates specific transcription programs of particular types of human cancer [34].

In addition to aging and cancer, the heat-shock re- sponse, in combination with the ILS pathway, is also

involved in protein aggregation in both worms and humans. When raised at 25 8C, nematodes expressing polyglutamine (polyQ) in muscle accumulate protein aggregates and become paralyzed [35]. Aberrant protein aggregation is a key characteristic of neurodegenerative diseases, such as Alzheimer’s disease, which is associated with the misassembly and aggregation of the Ab1–42 pep- tide. In C. elegans aggregation of Ab1–42 was reduced when aging was slowed by decreased ILS activity. The down- stream transcription factors HSF-1 and DAF-16 regulate opposing disaggregation and aggregation activities [36]. This suggests that therapeutics which prevent the age- related decline in proteostasis and promote the upregula- tion of chaperones would slow down disease manifestation.

Taken together, we conclude that conducting heat-shock experiments in C. elegans provides fundamental insights into the role of HSPs, HSF-1, and the ILS pathway, and may be useful for understanding cancer, aging, and age- related neurodegenerative diseases in humans.

Oxidative stress High doses of reactive oxygen species (ROS) cause oxida- tive stress. In most cells the primary source of ROS is the mitochondrion due to inefficiencies in oxidative phosphor- ylation. Oxidative damage is especially known to disrupt proteostasis, but it can also affect lipids, membranes, and DNA. In C. elegans, environmental perturbations that induce ROS can lead to reduced levels of dopamine, an important neurotransmitter which is released by nerve cells. One study looked at the stress response to paraquat, a herbicide that can lead to the formation of ROS [37], and its effect on neurite outgrowth in C. elegans [38]. They studied the effect of mutations in the genes pink-1 and lrk- 1 to paraquat sensitivity. They demonstrated that lrk-1 mutation suppressed all phenotypic aspects of the pink-1 mutation, suggesting that PINK-1 may antagonize LRK-1 in humans. Both genes encode putative kinases highly similar to human PINK1 [phosphatase and tensin (PTEN) homolog-induced putative kinase 1] and LRRK2 (leucine- rich repeat kinase 2), mutations in which have been asso- ciated with Parkinson’s disease [39]. Many other chemical perturbations causing ROS have been used in C. elegans to

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model Parkinson’s disease [13], illustrating the utility of studying oxidative stress in worms to understand human neurodegenerative diseases.

Mutations in mev-1, encoding the C. elegans cytochrome b subunit of the mitochondrial respiratory chain complex II (ubiquinol–cytochrome c reductase), result in increased sensitivity to oxidative stress. mev-1 is orthologous to the human Isoform 1 of succinate dehydrogenase cyto- chrome b (SDHC). Recent studies showed that the mev- 1(kn-1) mutation, which results in an amino acid substitu- tion at position 71 from glycine to glutamate (G71E), dramatically reduced mitochondrial complex II activity. The accumulation of ROS is twofold greater in mev-1(kn-1) worms relative to wild type, and consequently the mutant animals have shorter lifespans. Mev-1(kn-1) worms show reduced glutathione concentrations, and this metabolic imbalance might be caused by the role played by succinate dehydrogenase (SDH) in the citric acid cycle.

In humans, mutations in mitochondrial enzymes from SDH family genes cause a genetic predisposition to develop certain types of tumors [40]. SDH deficiencies might trig- ger hypoxic conditions, resulting in increased activity of hypoxia inducible factor, a transcription factor involved in regulating cellular oxygen balance that can cause changes in cells and metabolism, and in some cases plays an essential role in angiogenesis, metastasis, and cell prolif- eration [41]. This factor and other features of hypoxia stress are discussed below.

Hypoxia and CO2 fluctuation Low levels of O2 (hypoxia) can lead to decreased metabolic rate, increased glycolysis, and pausing or slowing of the cell cycle. Oxygen levels are severely affected by disease states such as cancer and various heart and lung diseases, where cells and tissues suffer from very low oxygen conditions (pathological hypoxia) [42].

Work in C. elegans has greatly increased our knowledge about the underlying mechanisms of hypoxic effects. In contrast to mammals, nematodes do not have specific respiratory organs but instead depend on diffusion for exchange of O2 and CO2. The body cavity is filled with fluid which allows rapid exchange of gases and chemicals across the cells. Hypoxia activates hypoxia inducible factor 1 (hif-1) in C. elegans [43,44]. In normal O2 conditions, the protein HIF-1 is targeted for degradation by a prolyl- hydroxylase encoded by egl-9 in C. elegans, the mammalian ortholog of this gene being EGLN/PHD [45].

C. elegans shows a wide CO2 tolerance compared to other animals. However different studies have shown that C. elegans avoids high levels of CO2 [46]. Furthermore, it was found that the intensity of CO2 avoidance was sup- pressed under starvation conditions. Food-sensing path- ways are closely related to O2 and CO2 sensitivity in C. elegans. One of the most important pathways related to food sensing is the ILS pathway. It is known that high activity of the ILS pathway is directly correlated with a well-fed state. In daf-2, pdk-1, or akt-1 mutants, all of which mimic starvation conditions, CO2 avoidance was suppressed. However in daf-2; daf-16 double mutants, where the starvation signal was suppressed, the worms did show high avoidance of CO2. This could suggest that

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starvation suppresses CO2 avoidance by downregulating the ILS pathway, activating translocation of DAF-16 into the nucleus to act as a transcription factor [46]. This response is common to stress conditions, which suggests that stress conditions such as starvation and heat shock may be linked to a disruption in O2/CO2 levels. Further- more, hypoxia is also associated with oxidative stress, highlighting another link between these stress response pathways (Figure 1) [47].

As in worms, hypoxic environments activate HIF in humans (HIF is the ortholog of HIF-1 in C. elegans). This activation plays a central role in tissue repair, ischemia, and cancer [48]. The hydroxylation of the HIF proline residue, an evolutionarily conserved mechanism, leads to degradation of HIF by the von Hippel–Lindau tumor suppressor protein (VHL). In hypoxic conditions, the pro- line hydroxylation and degradation of HIF are decreased. HIF then activates target genes to increase oxygen transport. Within tumors, hypoxia can lead to HIF-1a (consisting of subunits HIF-1a, HIF-2a, and HIF-3a), overexpression of which has been shown to increase patient mortality in different types of cancer [49].

Osmotic stress Hypertonic or osmotic stress induces protein damage by aggregation. Under desiccated conditions resulting from hypertonic stress, the loss of water leads to an intracellular ionic imbalance, causing protein aggregation. Studies in C. elegans suggested that nematodes may have independent pathways to control proteotoxic effects and survive osmotic shock [50,51]. In hyperosmotic stress conditions, gpdh-1, which encodes a glycerol-3-phosphate dehydrogenase (GPDH-1), is strongly upregulated. GPDH-1 induces de novo biosynthesis of glycerol, leading to rapid accumula- tion of organic osmotic glycerol in cells. This is a typical effect of hyperosmotic stress in cells [52]. Expression of gpdh-1 is regulated by two GATA transcription factors, elt- 2 and elt-3 [53]. Both factors are also required for other developmental as well as non-developmental processes [53,54]. The enzymatic activity of GPDH-1 is regulated by osmotic regulatory genes, including osm-7, osm-11, and osm-8, which have been described as critical regulators in osmotic disorders [55]. In C. elegans, disruptions in osmotic regulatory genes lead to physiological responses similar to the response to hyperosmotic stress conditions [52,53]. Recent studies showed that osmotic regulatory genes reg- ulate osmotic stress resistance independent from other stress response mechanisms [56,57]. It has been reported that the response mediated by gpdh-1 is very specific, and its activation occurs rapidly after the osmotic shock (<15 min) and at relatively low levels of salt (200 mM NaCl) [58]. This is in contrast to the osmotically induced accumulation of damaged proteins, which occurs only at high salt concentrations (>500 mM NaCl) and takes ap- proximately 1 h. Both mechanisms (glycerol production and accumulation of damaged proteins) could be employed by cells against different levels of osmotic stress; in other words, they are not cooperative, but instead work indepen- dently in different situations depending on stress condi- tions. Because the accumulation of damaged proteins is an important feature of diseases such as Alzheimer’s and

Hypoxia

Heat stress

Misfolded protein Na�ve protein

ROS

HSPs

Target genes for O2 transport

ILS pathway

HIF-1

HSF-1 DAF-16

Cytoplasm

Nucleus

DAF-2

Oxida�ve stress

Osmo�c stress

Accumula�on of misfolded proteins

TRENDS in Genetics

Figure 1. Schematic representation of stress response in a Caenorhabditis elegans cell. Hypoxia, heat stress, and oxidative stress provoke an abnormal conformation of

native proteins. The accumulation of misfolded proteins leads to a proteostasis imbalance in the cytoplasm resulting in cellular osmotic stress. In these conditions the stress

response mechanism is activated mainly by enhancing the insulin-like signaling (ILS) pathway. The transmembrane receptor DAF-2 initiates the intracellular signaling that

directs the transcription factors DAF-16 and HSF-1 into the nucleus where they activate gene expression of heat-shock proteins (HSPs). HSPs are molecular chaperones that

help re-establish proteostasis by rescuing misfolded proteins. Hypoxia activates the stress response through ILS and expression of hypoxia inducible factor (HIF-1) and its

entry into nucleus to act as a transcription factor to activate the expression of target genes for O2 transportation.

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Parkinson’s [59], insight into the molecular mechanisms of osmotically induced protein damage in C. elegans may help to unravel these complex phenotypes genetically. We suggest that the mechanisms of glycerol production and accumulation of damaged proteins in worms might be useful targets for developing potential Alzheimer’s and Parkinson’s therapeutics.

Implications for drug discovery The mechanisms of stress response we presented demon- strate that different stressors share a common and well- conserved molecular response to changes in proteostasis in cells. There are several oncological, neurodegenerative, and metabolic disorders that are triggered by an accumu- lation of misfolded proteins as a result of cellular stress. Therefore, controlling misfolded protein imbalance may be a therapeutic tool to control damage that leads to complex human diseases. Many of the diseases related with pro- teostasis are associated with aging [60]. During aging, the accumulation of protein aggregates leads to an amplifica- tion of protein damage that contributes to cellular toxicity.

Stress response analysis in C. elegans offers the oppor- tunity to discover new receptors and targets for drugs to treat various diseases. Heat-shock experiments can be used to investigate the genetics and molecular biology of inhibitors of HSF-1. This type of experiment further opens up new ways for assessing if small HSPs or particular protein aggregates or aggregation mechanisms are

druggable. For instance, specific activators of HSF1 such as geldanamycin were effective in both polyglutamine (polyQ) disease models as well as other neurodegenerative disease models [61]. Along these same lines, many strate- gies are emerging to restore proteostasis to alter the clinical course in complex age-associated diseases in humans [62], which can be investigated using heat-shock experiments in C. elegans.

New trends in therapeutics are pointing at small-mole- cule pharmacological chaperones as proteostasis regulators. These regulators have been shown to increase the capacity of cells to correctly re-fold damaged proteins [62]. Many proteostasis regulators have been described recently that control HSF1 and in turn upregulate levels of cytoplasmic HSPs. More recently, the identification of around 300 chem- ical inducers of the heat-shock response was reported by screening for HSF-1 dependent activators of expression of chaperones in human cells [63]. This suggests that pharma- cological manipulation of the heat-shock response could be of benefit in a variety of multiple conformational diseases like Alzheimers’ disease and Parkinsons’ disease.

Currently, clinical trials are testing chaperone inhibi- tors such as an inhibitor of HSP in combination with proteasome inhibitors on cancer cell fate to control endo- plasmic reticulum (ER)–Golgi homeostasis (see www.cli- nicaltrials.org) based on the fact that a high proteostasis capability may lead to proliferation of cancer cells. It was demonstrated that the adaptive biology to proteostasis by

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developing an effective stress response mechanism, such as overexpression of chaperones like HSP-70, confers pro- tection from proteotoxicity in cases of polyQ aggregates in Huntington’s disease [64] or a-synuclein aggregates in Parkinson’s disease pathogenesis [65].

Furthermore, human HSF1 plays an important role in cancer cells, and its aberrant regulation can lead to dis- rupted signaling and malignant changes in DNA, protein, and energy metabolism, thus promoting tumorigenesis [66]. Very interestingly, recent studies in humans have shown how HSF1 not only regulates disease though the classic heat-shock response and therefore HSPs, but also regulates transcriptional programs specific to malignant cells [34]. Hypoxia experiments in C. elegans focus on HIF-1, which is directly relevant to human disease. HIF-1a activity has been used to induce angiogenesis (the growth of new capil- lary blood vessels) for use in ischemic disease (disease of reduced blood supply). In models of hind-limb ischemia, active HIF-1a was shown to be beneficial alone or in combi- nation with bone marrow-derived angiogenic cells [67,68]. More information on drug development on the basis of HIF and the response to hypoxic stress can be found in [69].

Concluding remarks Although there are clear limitations to using C. elegans stress response as a model for human disease, we suggest that nematodes are an ideal first proxy for studies that can be followed-up in closer models such as rodents. One of the C. elegans limitations is that in the ILS pathway C. elegans only has one receptor for both insulin and IGF-1, whereas mammals have separate insulin and IGF1 receptors. The central role of this signaling pathway in many stress response and complex diseases poses a challenge to trans-

Box 2. Importance of background genotype in studying

stress responses

Most research on stress responses in C. elegans to date has made

use of forward and reverse genetic screens. A common feature of all

these genetic perturbation screens is that they are carried out in a

single genotype (i.e., the wild type strain Bristol N2): in other words,

mutants and RNAi screens are studied within a single genotype.

Although these approaches have been very valuable for dissecting

genetic pathways, if we want to gain an understanding of how

variation within these pathways gives rise to differences among

individuals, studying the pathways in different genotypes under

different stress regimes becomes essential [88]. Steps have already

been taken into this area through studies focusing on heat shock

[89]. Using genomic mosaics derived from a cross between wild

types N2 and CB4856 natural variation in heat-shock response was

detected. The ability of worms to recover from heat shock was

linked to a small region on chromosome II. Although more research

is required to identify the causal polymorphic genes, these

approaches indicate how novel genes and alleles can be detected

which affect the heat-shock response, and hence potential new

candidates of human disease genes. In particular, it allows under-

standing complex gene–environment interactions focusing on the

interaction between many alleles of small effect interacting with the

environment. This is of interest for translational research of human

disease because many complex diseases are regulated by the

interaction of small-effect genes and the environment. These

developments emanate from a vast number of studies that have

shown the power of natural genetic variation for identifying genes

underlying many different complex traits and combination of

stressors in C. elegans [4,90–97].

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lating knowledge from worms to humans. Worms also lack specific respiratory organs, which is important to consider when hypoxia experiments are used to gain insight into human disease. Further, current C. elegans experiments are carried out in a single genotype, Bristol N2, which might lead to biased conclusions (Box 2).

Despite these drawbacks, C. elegans provides research- ers with a rapid and versatile system for exploring features of complex human diseases. The conservation of the com- ponents of the pathways responding to heat shock, hypox- ia, osmotic, and oxidative stress makes these experiments valuable endeavors into understanding the genetics un- derlying various human diseases. As such, stress response experiments in C. elegans might provide potential new insights towards the development of new therapies that are translatable to the clinic.

Acknowledgments We apologize to those authors whose work could not be cited owing to the space constraints of reference citation. We gratefully acknowledge A.M. Finkers-Tomczak, J.L. Lozano, W.J. Postma, M.T.W. Vervoort, L.B. Westerhof, and R.H.P. Wilbers for critical review of the manuscript and helpful comments and suggestions. This research has received funding from the European Commission Seventh Framework Programme (FP7/2007-2013) under grant agreement PANACEA (nr 222936) and ERASysbio-plus ZonMW project GRAPPLE – Iterative modeling of gene regulatory interactions underlying stress, disease and ageing in C. elegans (Project 90201066), and Graduate School Production Ecology and Resource Conservation (PE&RC).

References 1 Brenner, S. (1974) The genetics of Caenorhabditis elegans. Genetics 77,

71–94 2 Antoshechkin, I. and Sternberg, P.W. (2007) The versatile worm:

genetic and genomic resources for Caenorhabditis elegans research. Nat. Rev. Genet. 8, 518–532

3 Xu, X. and Kim, S.K. (2011) The early bird catches the worm: new technologies for the Caenorhabditis elegans toolkit. Nat. Rev. Genet. 12, 793–801

4 Snoek, L.B. et al. (2013) WormQTL – public archive and analysis web portal for natural variation data in Caenorhabditis spp. Nucleic Acids Res. 41, D738–D743

5 Félix, M.A. and Barkoulas, M. (2012) Robustness and flexibility in nematode vulva development. Trends Genet. 28, 185–195

6 Kaletta, T. and Hengartner, M.O. (2006) Finding function in novel targets: C. elegans as a model organism. Nat. Rev. Drug Discov. 5, 387–398

7 Markaki, M. and Tavernarakis, N. (2010) Modeling human diseases in Caenorhabditis elegans. Biotechnol. J. 5, 1261–1276

8 Kenyon, C. (2010) A pathway that links reproductive status to lifespan in Caenorhabditis elegans. Ann. N. Y. Acad. Sci. 1204, 156–162

9 Christensen, K. et al. (2006) The quest for genetic determinants of human longevity: challenges and insights. Nat. Rev. Genet. 7, 436–448

10 Fuchs, Y. and Steller, H. (2011) Programmed cell death in animal development and disease. Cell 147, 742–758

11 Calahorro, F. and Ruiz-Rubio, M. (2011) Caenorhabditis elegans as an experimental tool for the study of complex neurological diseases: Parkinson’s disease, Alzheimer’s disease and autism spectrum disorder. Invert. Neurosci. 11, 73–83

12 De Deyn, P.P. et al. (2011) Caenorhabditis elegans as a model organism for dementia. In Animal Models of Dementia (De Deyn, P.P. and Van Dam, D., eds), pp. 241–253, Humana Press

13 Harrington, A.J. et al. (2010) C. elegans as a model organism to investigate molecular pathways involved with Parkinson’s disease. Dev. Dyn. 239, 1282–1295

14 Kirienko, N.V. and Fay, D.S. (2010) SLR-2 and JMJC-1 regulate an evolutionarily conserved stress-response network. EMBO J. 29, 727–739

15 Rea, S.L. et al. (2010) Bacteria, yeast, worms, and flies: exploiting simple model organisms to investigate human mitochondrial diseases. Dev. Disabil. Res. Rev. 16, 200–218

Review Trends in Genetics June 2013, Vol. 29, No. 6

16 Wiese, M. et al. (2010) Intracellular trafficking and synaptic function of APL-1 in Caenorhabditis elegans. PLoS ONE 5, e12790

17 Benian, G.M. and Epstein, H.F. (2011) Caenorhabditis elegans muscle: a genetic and molecular model for protein interactions in the heart. Circ. Res. 109, 1082–1095

18 Lant, B. and Storey, K.B. (2010) An overview of stress response and hypometabolic strategies in Caenorhabditis elegans: conserved and contrasting signals with the mammalian system. Int. J. Biol. Sci. 6, 9–50

19 Hsu, A.L. et al. (2003) Regulation of aging and age-related disease by DAF-16 and heat-shock factor. Science 300, 1142–1145

20 Anckar, J. and Sistonen, L. (2007) Heat shock factor 1 as a coordinator of stress and developmental pathways. Adv. Exp. Med. Biol. 594, 78–88

21 Sendoel, A. et al. (2010) HIF-1 antagonizes p53-mediated apoptosis through a secreted neuronal tyrosinase. Nature 465, 577–583

22 Prahlad, V. et al. (2008) Regulation of the cellular heat shock response in Caenorhabditis elegans by thermosensory neurons. Science 320, 811–814

23 Prahlad, V. and Morimoto, R.I. (2009) Integrating the stress response: lessons for neurodegenerative diseases from C. elegans. Trends Cell Biol. 19, 52–61

24 Morimoto, R.I. (2011) The heat shock response: systems biology of proteotoxic stress in aging and disease. Cold Spring Harb. Symp. Quant. Biol. 76, 91–99

25 Kourtis, N. et al. (2012) Small heat-shock proteins protect from heat- stroke-associated neurodegeneration. Nature 490, 213–218

26 Volovik, Y. et al. (2012) Temporal requirements of heat shock factor-1 for longevity assurance. Aging Cell 11, 491–499

27 Chiang, W.C. et al. (2012) HSF-1 regulators DDL-1/2 link insulin-like signaling to heat-shock responses and modulation of longevity. Cell 148, 322–334

28 Willcox, B.J. et al. (2008) FOXO3A genotype is strongly associated with human longevity. Proc. Natl. Acad. Sci. U.S.A. 105, 13987–13992

29 Flachsbart, F. et al. (2009) Association of FOXO3A variation with human longevity confirmed in German centenarians. Proc. Natl. Acad. Sci. U.S.A. 106, 2700–2705

30 Pollak, M. (2008) Insulin and insulin-like growth factor signalling in neoplasia. Nat. Rev. Cancer 8, 915–928

31 Strassburger, K. et al. (2012) Insulin/IGF signaling drives cell proliferation in part via Yorkie/YAP. Dev. Biol. 367, 187–196

32 Westerheide, S.D. et al. (2009) Stress-inducible regulation of heat shock factor 1 by the deacetylase SIRT1. Science 323, 1063–1066

33 Yi, J. and Luo, J. (2010) SIRT1 and p53, effect on cancer, senescence and beyond. Biochim. Biophys. Acta 1804, 1684–1689

34 Mendillo, M.L. et al. (2012) HSF1 drives a transcriptional program distinct from heat shock to support highly malignant human cancers. Cell 150, 549–562

35 Alavez, S. et al. (2011) Amyloid-binding compounds maintain protein homeostasis during ageing and extend lifespan. Nature 472, 226–229

36 Hartl, F.U. et al. (2011) Molecular chaperones in protein folding and proteostasis. Nature 475, 324–332

37 Moran, J.M. et al. (2010) Nitric oxide in paraquat-mediated toxicity: a review. J. Biochem. Mol. Toxicol. 24, 402–409

38 Samann, J. et al. (2009) Caenorhabditits elegans LRK-1 and PINK-1 act antagonistically in stress response and neurite outgrowth. J. Biol. Chem. 284, 16482–16491

39 Thomas, B. and Beal, M.F. (2007) Parkinson’s disease. Hum. Mol. Genet. 16, R183–R194

40 Hoekstra, A.S. and Bayley, J.P. (2012) The role of complex II in disease. Biochim. Biophys. Acta Bioenerg. http://dx.doi.org/10.1016/ j.bbabio.2012.11.005

41 Ishii, T. et al. (2012) Model animals for the study of oxidative stress from complex II. Biochim. Biophys. Acta Bioenerg. http://dx.doi.org/ 10.1016/j.bbabio.2012.11.016

42 Helmlinger, G. et al. (1997) Interstitial pH and pO2 gradients in solid tumors in vivo: high-resolution measurements reveal a lack of correlation. Nat. Med. 3, 177–182

43 Jiang, H. et al. (2001) The Caenorhabditis elegans hif-1 gene encodes a bHLH-PAS protein that is required for adaptation to hypoxia. Proc. Natl. Acad. Sci. U.S.A. 98, 7916–7921

44 Yu, R. et al. (2001) Association of HIF-1alpha expression and cell apoptosis after traumatic brain injury in the rat. Chin. J. Traumatol. 4, 218–221

45 Hsu, T. (2012) Complex cellular functions of the von Hippel–Lindau tumor suppressor gene: insights from model organisms. Oncogene 31, 2247–2257

46 Bretscher, A.J. et al. (2008) A carbon dioxide avoidance behavior is integrated with responses to ambient oxygen and food in Caenorhabditis elegans. Proc. Natl. Acad. Sci. U.S.A. 105, 8044–8049

47 Li, Y. et al. (2009) HUMMR, a hypoxia- and HIF-1alpha-inducible protein, alters mitochondrial distribution and transport. J. Cell Biol. 185, 1065–1081

48 Benizri, E. et al. (2008) The magic of the hypoxia-signaling cascade. Cell. Mol. Life Sci. 65, 1133–1149

49 Semenza, G.L. (2003) Targeting HIF-1 for cancer therapy. Nat. Rev. Cancer 3, 721–732

50 Hoppe, T. (2011) Too salty for worms: hypertonic stress challenges proteostasis networks. Focus on ‘Hypertonic stress induces rapid and widespread protein damage in C. elegans’. Am. J. Physiol. Cell Physiol. 301, C555–C556

51 Burkewitz, K. et al. (2011) Hypertonic stress induces rapid and widespread protein damage in C. elegans. Am. J. Physiol. Cell Physiol. 301, C566–C576

52 Rohlfing, A.K. et al. (2011) The Caenorhabditis elegans mucin-like protein OSM-8 negatively regulates osmosensitive physiology via the transmembrane protein PTR-23. PLoS Genet. 7, e1001267

53 Shaye, D.D. and Greenwald, I. (2011) OrthoList: a compendium of C. elegans genes with human orthologs. PLoS ONE 6, e20085

54 Fukushige, T. et al. (1998) The GATA-factor elt-2 is essential for formation of the Caenorhabditis elegans intestine. Dev. Biol. 198, 286–302

55 Moronetti Mazzeo, L.E. et al. (2012) Stress and aging induce distinct polyQ protein aggregation states. Proc. Natl. Acad. Sci. U.S.A. 109, 10587–10592

56 Dossena, S. et al. (2011) The molecular and functional interaction between ICln and HSPC038 proteins modulates the regulation of cell volume. J. Biol. Chem. 286, 40659–40670

57 Kage-Nakadai, E. et al. (2011) H+/myo-inositol transporter genes, hmit- 1.1 and hmit-1.2, have roles in the osmoprotective response in Caenorhabditis elegans. Biochem. Biophys. Res. Commun. 410, 471–477

58 Lamitina, T. et al. (2006) Genome-wide RNAi screening identifies protein damage as a regulator of osmoprotective gene expression. Proc. Natl. Acad. Sci. U.S.A. 103, 12173–12178

59 Selkoe, D.J. (2004) Cell biology of protein misfolding: the examples of Alzheimer’s and Parkinson’s diseases. Nat. Cell Biol. 6, 1054–1061

60 Alavez, S. and Lithgow, G.J. (2012) Pharmacological maintenance of protein homeostasis could postpone age-related disease. Aging cell 11, 187–191

61 Nagai, Y. et al. (2010) Induction of molecular chaperones as a therapeutic strategy for the polyglutamine diseases. Curr. Pharm. Biotechnol. 11, 188–197

62 Balch, W.E. et al. (2008) Adapting proteostasis for disease intervention. Science 319, 916–919

63 Calamini, B. et al. (2012) Small-molecule proteostasis regulators for protein conformational diseases. Nat. Chem. Biol. 8, 185–196

64 Morley, J.F. et al. (2002) The threshold for polyglutamine-expansion protein aggregation and cellular toxicity is dynamic and influenced by aging in Caenorhabditis elegans. Proc. Natl. Acad. Sci. U.S.A. 99, 10417–10422

65 Auluck, P.K. et al. (2002) Chaperone suppression of alpha-synuclein toxicity in a Drosophila model for Parkinson’s disease. Science 295, 865–868

66 Whitesell, L. and Lindquist, S. (2009) Inhibiting the transcription factor HSF1 as an anticancer strategy. Expert Opin. Ther. Targets 13, 469–478

67 Bosch-Marce, M. et al. (2007) Effects of aging and hypoxia-inducible factor-1 activity on angiogenic cell mobilization and recovery of perfusion after limb ischemia. Circ. Res. 101, 1310–1318

68 Rey, S. et al. (2009) Synergistic effect of HIF-1alpha gene therapy and HIF-1-activated bone marrow-derived angiogenic cells in a mouse model of limb ischemia. Proc. Natl. Acad. Sci. U.S.A. 106, 20399–20404

69 Majmundar, A.J. et al. (2010) Hypoxia-inducible factors and the response to hypoxic stress. Mol. Cell 40, 294–309

70 Morley, J.F. and Morimoto, R.I. (2004) Regulation of longevity in Caenorhabditis elegans by heat shock factor and molecular chaperones. Mol. Biol. Cell 15, 657–664

373

Review Trends in Genetics June 2013, Vol. 29, No. 6

71 Vertino, A. et al. (2011) A narrow quantitative trait locus in C. elegans coordinately affects longevity, thermotolerance, and resistance to paraquat. Front. Genet. 2, 63

72 Knoefler, D. et al. (2012) Quantitative in vivo redox sensors uncover oxidative stress as an early event in life. Mol. Cell 47, 767–776

73 Park, E.C. et al. (2012) Hypoxia regulates glutamate receptor trafficking through an HIF-independent mechanism. EMBO J. 31, 1379–1393

74 Tissenbaum, H.A. (2012) Genetics, life span, health span, and the aging process in Caenorhabditis elegans. J. Gerontol. A: Biol. Sci. Med. Sci. 67, 503–510

75 Yen, K. et al. (2011) DAF-16/Forkhead box O transcription factor: many paths to a single Fork(head) in the road. Antioxid. Redox Signal. 14, 623–634

76 Anckar, J. and Sistonen, L. (2011) Regulation of HSF1 function in the heat stress response: implications in aging and disease. Annu. Rev. Biochem. 80, 1089–1115

77 Doonan, R. et al. (2008) Against the oxidative damage theory of aging: superoxide dismutases protect against oxidative stress but have little or no effect on life span in Caenorhabditis elegans. Genes Dev. 22, 3236–3241

78 Fujii, M. et al. (2011) Mutation in a mitochondrial ribosomal protein causes increased sensitivity to oxygen with decreased longevity in the nematode Caenorhabditis elegans. Genes Cells 16, 69–79

79 Fujii, M. et al. (2011) A mutation in a mitochondrial dehydrogenase/ reductase gene causes an increased sensitivity to oxidative stress and mitochondrial defects in the nematode Caenorhabditis elegans. Genes Cells 16, 1022–1034

80 Jaubert, J. et al. (1999) Three new allelic mouse mutations that cause skeletal overgrowth involve the natriuretic peptide receptor C gene (Npr3). Proc. Natl. Acad. Sci. U.S.A. 96, 10278–10283

81 Mok, C.A. et al. (2011) Mutations in a guanylate cyclase GCY-35/GCY- 36 modify Bardet–Biedl syndrome-associated phenotypes in Caenorhabditis elegans. PLoS Genet. 7, e1002335

82 Young, R.M. and Simon, M.C. (2012) Untuning the tumor metabolic machine: HIF-alpha: pro- and antitumorigenic? Nat. Med. 18, 1024– 1025

83 Zhuang, Z. et al. (2012) Somatic HIF2A gain-of-function mutations in paraganglioma with polycythemia. N. Engl. J. Med. 367, 922–930

374

84 Chintala, S. et al. (2012) Prolyl hydroxylase 2 dependent and Von Hippel–Lindau independent degradation of hypoxia-inducible factor 1 and 2 alpha by selenium in clear cell renal cell carcinoma leads to tumor growth inhibition. BMC Cancer 12, 293

85 Basel-Vanagaite, L. et al. (2012) Transient infantile hypertriglyceridemia, fatty liver, and hepatic fibrosis caused by mutated GPD1, encoding glycerol-3-phosphate dehydrogenase 1. Am. J. Hum. Genet. 90, 49–60

86 Allen, H.L. et al. (2012) GATA6 haploinsufficiency causes pancreatic agenesis in humans. Nat. Genet. 44, 20–22

87 Zhang, W. et al. (2008) GATA4 mutations in 486 Chinese patients with congenital heart disease. Eur. J. Med. Genet. 51, 527–535

88 Kammenga, J.E. et al. (2008) Beyond induced mutants: using worms to study natural variation in genetic pathways. Trends Genet. 24, 178–185

89 Rodriguez, M. et al. (2012) Genetic variation for stress-response hormesis in C. elegans lifespan. Exp. Gerontol. 47, 581–587

90 Gutteling, E.W. et al. (2007) Environmental influence on the genetic correlations between life-history traits in Caenorhabditis elegans. Heredity 98, 206–213

91 Jonker, M.J. et al. (2004) Toxicity of simple mixtures to the nematode Caenorhabditis elegans in relation to soil sorption. Environ. Toxicol. Chem. 23, 480–488

92 Kammenga, J.E. et al. (2007) A Caenorhabditis elegans wild type defies the temperature-size rule owing to a single nucleotide polymorphism in tra-3. PLoS Genet. 3, 358–366

93 McGrath, P.T. et al. (2009) Quantitative mapping of a digenic behavioral trait implicates globin variation in C. elegans sensory behaviors. Neuron 61, 692–699

94 Viñuela, A. et al. (2010) Genome-wide gene expression regulation as a function of genotype and age in C. elegans. Genome Res. 20, 929–937

95 Viñuela, A. et al. (2010) Genome-wide gene expression analysis in response to organophosphorus pesticide chlorpyrifos and diazinon in C. elegans. PLoS ONE 5, e12145

96 Viñuela, A. et al. (2012) Aging uncouples heritability and expression- QTL in Caenorhabditis elegans. G3 (Bethesda) 2, 597–605

97 de Bono, M. and Bargmann, C.I. (1998) Natural variation in a neuropeptide Y receptor homolog modifies social behavior and food response in C. elegans. Cell 94, 679–689

  • Worms under stress: C. elegans stress response and its relevance to complex human disease and aging
    • C. elegans as a model for complex human disease and aging
    • C. elegans stress pathways as a model for complex disease pathways in humans
    • Heat shock
    • Oxidative stress
    • Hypoxia and CO2 fluctuation
    • Osmotic stress
    • Implications for drug discovery
    • Concluding remarks
    • Acknowledgments
    • References