# This output was generated with AUGUSTUS (version 3.3.3).
# AUGUSTUS is a gene prediction tool written by M. Stanke (mario.stanke@uni-greifswald.de),
# O. Keller, S. König, L. Gerischer, L. Romoth and Katharina Hoff.
# Please cite: Mario Stanke, Mark Diekhans, Robert Baertsch, David Haussler (2008),
# Using native and syntenically mapped cDNA alignments to improve de novo gene finding
# Bioinformatics 24: 637-644, doi 10.1093/bioinformatics/btn013
# No extrinsic information on sequences given.
# Initializing the parameters using config directory /data/www/augustus/augustus/config/ ...
# aspergillus_fumigatus version. Using default transition matrix.
# Looks like /data/www/augustus/webservice/data/AUG-193441470/input.fa is in fasta format.
# We have hints for 0 sequences and for 0 of the sequences in the input set.
#
# ----- prediction on sequence number 1 (length = 20001, name = 42) -----
#
# Predicted genes for sequence number 1 on both strands
# start gene g1
42 AUGUSTUS gene 1 1902 0.55 - . g1
42 AUGUSTUS transcript 1 1902 0.55 - . g1.t1
42 AUGUSTUS internal 1 1048 0.81 - 0 transcript_id "g1.t1"; gene_id "g1";
42 AUGUSTUS internal 1118 1443 1 - 2 transcript_id "g1.t1"; gene_id "g1";
42 AUGUSTUS internal 1512 1591 0.87 - 1 transcript_id "g1.t1"; gene_id "g1";
42 AUGUSTUS initial 1655 1902 0.72 - 0 transcript_id "g1.t1"; gene_id "g1";
42 AUGUSTUS intron 1049 1117 0.99 - . transcript_id "g1.t1"; gene_id "g1";
42 AUGUSTUS intron 1444 1511 1 - . transcript_id "g1.t1"; gene_id "g1";
42 AUGUSTUS intron 1592 1654 0.78 - . transcript_id "g1.t1"; gene_id "g1";
42 AUGUSTUS CDS 1 1048 0.81 - 0 transcript_id "g1.t1"; gene_id "g1";
42 AUGUSTUS CDS 1118 1443 1 - 2 transcript_id "g1.t1"; gene_id "g1";
42 AUGUSTUS CDS 1512 1591 0.87 - 1 transcript_id "g1.t1"; gene_id "g1";
42 AUGUSTUS CDS 1655 1902 0.72 - 0 transcript_id "g1.t1"; gene_id "g1";
42 AUGUSTUS start_codon 1900 1902 . - 0 transcript_id "g1.t1"; gene_id "g1";
# coding sequence = [atgctctcgcttaacacagaacggtcgaagggaactactggcgattccttagaattgacagatgttctgaaaaatggca
# cactatcaacactggccaatgaggatatctgtgaaaaaaatgacagctctacttcaggatcacgagaaacagttggccgagcgaaagatgacacaaat
# tacccaaagggcgcgaaaatgtttctcatagtggtctctctgtgtcttgcagtcttcttgatggctttagacaactcggtgataaccacagcgattcc
# aaaaatcactgatgactttggtagcgtgttagatgtagggtggtacggaagtgcttacttgctgacaactgcctccctgcaactcattttcggcaaga
# tttacacattttggagcatcaaattggttttcttatcgaccatcgccgtattcgagctcggtagcttaatatgcgccgtcgcaccttcatcaacggct
# tttatcgtcggacgagcaattgctggatctggttctgccggtatattttccggtgctctgctcatcatcacccatacttctcctctggcaaaacgacc
# aacatatatcggtttagcgggcggtatgtatgggatagcatctgtggctggtcctatcatcggaggcgtccttactgacaatgtgtcttggcgatggt
# gcttttatataaatctaccactgggcggcgttacggctctggccatctggttgatcctcaaggatccgcaacgagatgtgccaacgcttcaaacttgg
# atggatcgcataagagtcttggatcccattgggaccctgattttcttaccagcaatggtttgcctgttgctcaccctacaatggggaggttcgaagta
# cagctggaatgatgggcgaatcattgctcttctggttctttctggcgttctgatcatagcttttctgcttatccagcttcgcctacaagaagctgcaa
# cagtgcctccgcgcatctttcgcaatcgttccgtgtgggctggttgcctctacgggttttgtacaagttcggcattttttcttgtcatatactacatc
# cccatttggttccaggcaatacaaggagtttcagctattgaatccggcattcgaaaccttccaatgatgatttcaacaattctcatgtctataatggt
# cggcggcctggtgacggctctaggatactatacgccgttcatgattgcggcagcaattctttcctctgtcggagcaggtcttctctctacttttgcag
# ttcatacctcaagcgggaaatggattggttatcagatcctgttcggcatcggatacagtctcggttcaagacagcctttggtggctgttcaggcagcc
# ctagaaacaaaggacatacctattggtacatctatcattatgtttctgcaaacacttggcggaatgatctttgtcagtatcggaaactcgatctttac
# aaactcccttgtcaactcacttgctcacaatgtgccatcggtaaatccaaccattatcactacaaccggagcaactgacatcaagaatatcgtatccg
# cggaggagctgcccaaggtactcatagcatacaaccatgctctagaccaggcattcttggcagctgctgccatggccgctctctccgtctttggcagt
# gtcctggttccgtggttgagtgtaaagcagaactaccacgaggtggatgaaccag]
# protein sequence = [MLSLNTERSKGTTGDSLELTDVLKNGTLSTLANEDICEKNDSSTSGSRETVGRAKDDTNYPKGAKMFLIVVSLCLAVF
# LMALDNSVITTAIPKITDDFGSVLDVGWYGSAYLLTTASLQLIFGKIYTFWSIKLVFLSTIAVFELGSLICAVAPSSTAFIVGRAIAGSGSAGIFSGA
# LLIITHTSPLAKRPTYIGLAGGMYGIASVAGPIIGGVLTDNVSWRWCFYINLPLGGVTALAIWLILKDPQRDVPTLQTWMDRIRVLDPIGTLIFLPAM
# VCLLLTLQWGGSKYSWNDGRIIALLVLSGVLIIAFLLIQLRLQEAATVPPRIFRNRSVWAGCLYGFCTSSAFFLVIYYIPIWFQAIQGVSAIESGIRN
# LPMMISTILMSIMVGGLVTALGYYTPFMIAAAILSSVGAGLLSTFAVHTSSGKWIGYQILFGIGYSLGSRQPLVAVQAALETKDIPIGTSIIMFLQTL
# GGMIFVSIGNSIFTNSLVNSLAHNVPSVNPTIITTTGATDIKNIVSAEELPKVLIAYNHALDQAFLAAAAMAALSVFGSVLVPWLSVKQNYHEVDEP]
# end gene g1
###
# start gene g2
42 AUGUSTUS gene 2880 4050 0.63 + . g2
42 AUGUSTUS transcript 2880 4050 0.63 + . g2.t1
42 AUGUSTUS start_codon 2880 2882 . + 0 transcript_id "g2.t1"; gene_id "g2";
42 AUGUSTUS initial 2880 3439 0.81 + 0 transcript_id "g2.t1"; gene_id "g2";
42 AUGUSTUS terminal 3513 4050 0.67 + 1 transcript_id "g2.t1"; gene_id "g2";
42 AUGUSTUS intron 3440 3512 0.88 + . transcript_id "g2.t1"; gene_id "g2";
42 AUGUSTUS CDS 2880 3439 0.81 + 0 transcript_id "g2.t1"; gene_id "g2";
42 AUGUSTUS CDS 3513 4047 0.67 + 1 transcript_id "g2.t1"; gene_id "g2";
42 AUGUSTUS stop_codon 4048 4050 . + 0 transcript_id "g2.t1"; gene_id "g2";
# coding sequence = [atggccatctctaaaacacaaacagcagtcatccagacaaacgaaaagtcatcgcttccattgatcgtatcgcagtcgg
# taccaacgtttcaactgccttccgagcaatatgtactggttcgtgtgctggccgtggccctgaatcctacagatttcaaaatggtacagcactttcca
# atcggagacaatctcgctggttgcgacttttgcggaattatcgaggcatgcggcagcaacgacactgccaaccaatttccaattggaacacgagtatg
# cggtgcggtgtttccttacaaccccagtcagcgccaaagcggtgcctttgcggaatgggtgattgccgactctggtttattgctgaaggtcccggaag
# gttgggatgacctcgatgcagcggctttaggtggagtcagctggggtacctcagtactggctttttatgatcctgatgcgctggcactcattggtcgt
# cccactaagccgagtgagaaaagggaaccagttttggtttacggagctggcacaggatctggcacaatggcttgtcaattactaaggctagctggata
# cgcaccaattgcagttgcttcttcgaaatcggcagctatggctatggaatacggcgcaattggtgttgcagattatacatcctcaacttgtgctgaaa
# caatcaaacaactcgctggcggcgctccaatccgatatgttcttgattgcataaccacggcggaatcagctgcactttgcttcagtcttattgcccgt
# actggtggtcgctatgcttgccttgaagagttgagaccagcttggagaacacgtcgaacagttcgcgttaaggaagtcatgggcttcgaaggccttgg
# aataaaaattgatttaggaccgacggcctattcacgcgacgtcaatcttacccttcgcaaaatttgctgcgaagctaccaaggagattcagacggttc
# tcgatgaagggttactaaagccacatcctgttcgtgaggttacaggacaatggcaaggcatcattgatggactagctatgcttcagcgaggagacgta
# aaaggacaaaagctagtggtcagggtttctacgatataa]
# protein sequence = [MAISKTQTAVIQTNEKSSLPLIVSQSVPTFQLPSEQYVLVRVLAVALNPTDFKMVQHFPIGDNLAGCDFCGIIEACGS
# NDTANQFPIGTRVCGAVFPYNPSQRQSGAFAEWVIADSGLLLKVPEGWDDLDAAALGGVSWGTSVLAFYDPDALALIGRPTKPSEKREPVLVYGAGTG
# SGTMACQLLRLAGYAPIAVASSKSAAMAMEYGAIGVADYTSSTCAETIKQLAGGAPIRYVLDCITTAESAALCFSLIARTGGRYACLEELRPAWRTRR
# TVRVKEVMGFEGLGIKIDLGPTAYSRDVNLTLRKICCEATKEIQTVLDEGLLKPHPVREVTGQWQGIIDGLAMLQRGDVKGQKLVVRVSTI]
# end gene g2
###
# start gene g3
42 AUGUSTUS gene 5007 11216 0.08 - . g3
42 AUGUSTUS transcript 5007 11216 0.02 - . g3.t1
42 AUGUSTUS stop_codon 5007 5009 . - 0 transcript_id "g3.t1"; gene_id "g3";
42 AUGUSTUS terminal 5007 5140 0.94 - 2 transcript_id "g3.t1"; gene_id "g3";
42 AUGUSTUS internal 5204 6039 0.4 - 1 transcript_id "g3.t1"; gene_id "g3";
42 AUGUSTUS internal 6897 7113 0.53 - 2 transcript_id "g3.t1"; gene_id "g3";
42 AUGUSTUS internal 7180 7640 0.84 - 1 transcript_id "g3.t1"; gene_id "g3";
42 AUGUSTUS internal 7711 8475 0.61 - 1 transcript_id "g3.t1"; gene_id "g3";
42 AUGUSTUS internal 9599 9709 0.42 - 1 transcript_id "g3.t1"; gene_id "g3";
42 AUGUSTUS internal 9787 9962 0.85 - 0 transcript_id "g3.t1"; gene_id "g3";
42 AUGUSTUS internal 10051 10353 0.65 - 0 transcript_id "g3.t1"; gene_id "g3";
42 AUGUSTUS internal 10496 10522 0.33 - 0 transcript_id "g3.t1"; gene_id "g3";
42 AUGUSTUS initial 10581 11216 0.33 - 0 transcript_id "g3.t1"; gene_id "g3";
42 AUGUSTUS intron 5141 5203 1 - . transcript_id "g3.t1"; gene_id "g3";
42 AUGUSTUS intron 6040 6896 0.39 - . transcript_id "g3.t1"; gene_id "g3";
42 AUGUSTUS intron 7114 7179 0.94 - . transcript_id "g3.t1"; gene_id "g3";
42 AUGUSTUS intron 7641 7710 0.75 - . transcript_id "g3.t1"; gene_id "g3";
42 AUGUSTUS intron 8476 9598 0.35 - . transcript_id "g3.t1"; gene_id "g3";
42 AUGUSTUS intron 9710 9786 0.82 - . transcript_id "g3.t1"; gene_id "g3";
42 AUGUSTUS intron 9963 10050 0.97 - . transcript_id "g3.t1"; gene_id "g3";
42 AUGUSTUS intron 10354 10495 0.44 - . transcript_id "g3.t1"; gene_id "g3";
42 AUGUSTUS intron 10523 10580 0.33 - . transcript_id "g3.t1"; gene_id "g3";
42 AUGUSTUS CDS 5010 5140 0.94 - 2 transcript_id "g3.t1"; gene_id "g3";
42 AUGUSTUS CDS 5204 6039 0.4 - 1 transcript_id "g3.t1"; gene_id "g3";
42 AUGUSTUS CDS 6897 7113 0.53 - 2 transcript_id "g3.t1"; gene_id "g3";
42 AUGUSTUS CDS 7180 7640 0.84 - 1 transcript_id "g3.t1"; gene_id "g3";
42 AUGUSTUS CDS 7711 8475 0.61 - 1 transcript_id "g3.t1"; gene_id "g3";
42 AUGUSTUS CDS 9599 9709 0.42 - 1 transcript_id "g3.t1"; gene_id "g3";
42 AUGUSTUS CDS 9787 9962 0.85 - 0 transcript_id "g3.t1"; gene_id "g3";
42 AUGUSTUS CDS 10051 10353 0.65 - 0 transcript_id "g3.t1"; gene_id "g3";
42 AUGUSTUS CDS 10496 10522 0.33 - 0 transcript_id "g3.t1"; gene_id "g3";
42 AUGUSTUS CDS 10581 11216 0.33 - 0 transcript_id "g3.t1"; gene_id "g3";
42 AUGUSTUS start_codon 11214 11216 . - 0 transcript_id "g3.t1"; gene_id "g3";
# coding sequence = [atgtatgggccggttgtgcgcattgcgcccaaccacctctcattcaccgatccacgggcatggaaggatatttattacc
# accgtgttggggctgtaggtggtatggtggaaatggccaagtctaccgagttcacgcgaaatgtcaaaggccaacttaccaccattgttaatgccgac
# caagacgaacatcaacaactgagacgagcgctttctcatggcttctcggacagctccatgagacagcaagaacccaccatgctcaaacacataaacat
# gctagtggatagactacgaacggagtctggcaaaaatccggatatggcggcatggtataactggacaacctttgacctctcgagtgatctgatttttg
# gagagtcgttccattgtcttcaaacagtcaattatcacccatgggttgctactatcatgaaggctatcaagtttcatgcgttcatggtagctctaggt
# tatggcggtgctaggccgctggtcgaattgatccacaaagccggtggatttctcgcgatgaaaacaatgcgcggttatatcgatagtatgctaaagtc
# aaggctggcaatgaagcaaaggcatgatgacctttttgaaggtttggctaaaagacgagatgaatggtctccattctttaggggctatcttttggata
# aactcagcgtgaatgccactgtcctactcctagctggctccgaaaccactgcaacttgtctatctggcacaacctatttccttctgacgcatccagag
# gtcttggagaaggtgaccgcggagatcagatctgccttctcaacagacgcggatataaatattcaatcagtaaacaaattgacatacttgattcctgt
# attaaacgaatctttgcgaatgtacccacctttgacctctggaatggtgcgagaagtccctacaggaggtgctgagatcgcagggcgattcgttcccg
# gtgataccctagttgagatccaacattggtcgataaatcacagcaaggagaactgggtcgacccttggtcgtttcgccctgaacgttttatggtggat
# gtcaaagtagccaaggaacacagtgatatgttggaagccgttcaagcatttagcatgggaccgcggaattgcatcggaagaaatcttgcaatgacgga
# aatgcgtcttatcttggctaagattctctataattttgatatgaaacttgcgaatggcagccatagctggatcgagaggcagaagaattacaacgtga
# aactactgagcaagaacagcattgcgaaattctacatgggaacagtgccggtctacctcatctccggaacaaaacatatacagtccatattcggcagg
# gacaacaaagtcggaagcgaagaaattttcactcaggctgttcttcccactctttacaaaatgcccaagagccatgtagagcgctttgccaacgacaa
# gtccgggcgaggtcatgttcctgcaccaggcacggaaggcacaccaaaggaacagcgatactgggcgagatacgaacaaattcatacagaatatttgg
# cgagaacgcaacacttgaagcctattattcaggcatatagcaatcagcttgcgcacgatcttaataaatatcctcttgaaaagtggactacgctaggt
# gtggttgaaacgtgccgacgcgaggtgaccaaatgcgccatgagtactttgttgggccctaaggtcttcgagttggacccagacttcttggatacatt
# ttgggaattcgatcataatgtgtttatgcttacattgggctttcccaaatggctcaacccaggcccttacaatgcccaggacaagtacctctctacga
# tcgagaggtatgttcatgctgcttgggacaactttgactggaatgggccggacgccgaatcgagctgggaacctcatttcggtgctcgcgtttgtcgc
# gagattgcaaagtggttcaaggaaagtggctttccagacgtatccatatctggtgcacttggaactcttctcttcgcacagaattccaatactatccc
# aaccacaatgtggatgattctccggatcttccaggattcgtgcctactacaagcggtccgggaagaagtagctacaacctactccatcgaccctgtaa
# ctggtgaacatatttgtgatattcagaagttagtagtcttgcccttgctacagtcagtttttaccgaagttctgcgattgcacatgaatttcaacatt
# attcgccacgccaaagaaaacatcaccatggacggatacaatattcgaaagggggccatgttacaggtccctatgatggctgcgcattacgaagaaag
# tgtctggggatcaagtggacaccctgcttctgaattctgggctgagcgacacatcaaatacgtggaggacaccaaggaggacggcaagactgagcgca
# gacgtgtctttgctatggcggggcggccgagttcctactttcctttcggcggcggtccacccgtttgtcctggacgacacttcgctaaacacgagatc
# ctgactacaataggcatgttagtatcgaaattcgacatagaggttgttaaatgggtgaaattggacggatctccttcagaccgaccagcgcagaataa
# ccaaacctattgcggagcaggtactatgcctccagatcgtgagatgaagatcagaataaagcgactttgcacttgggcttcatttcgccctcctaaac
# ccgaatttaccgagaaaaatgtgcctagtcttgaaggcaaggtgtatctagttaccggctccaacacaggggttggaaaagaaacagctcgcattctc
# tactcaaagggggctaaagtgtggatggctgcgcgctctacggagaaggcgagcgtagctattgacgagatcaggaattctcagcccagttctaccgg
# ttcattgcattttcttcatttggatcttagcgatctcagcacggtgaagcaatccgccgagctattcttgtcgcaggaacaaacgctccatgttcttt
# tcaacaatgccggcgtaatggttgggacaccagaggcaacgaatactgttcaaggccatgagcttgcgctcggtgtcaattgtatcggaacgcatctc
# ttcaccaggcttgttacagctcttctggcaaagacagcaaaatccgagcccgaaggttcggtccgtgtgatctggctttcttcatttggattagagct
# tttcggtgcagaaaatgtgggcgttgcactcgacaatctggattatcatgagcccaaaccagcaactgagagatacggaatcagcaagtgtggtgctt
# gggcacttggtgtggagtatgcccggcgtcacaaagcagatggcattgtgagtgtaccgatcaacccaggtaatctgacctcggaacttgctcgcgac
# caacccgcagccttgaaggcaattgtcaaagtagtcggttatccccctataatgggtgcatacaccgagctttttgccgcattgtcgccagaaatcac
# cttggaaaagtcgggagaatgggtggctcctttcggaagattctaccccttgcgaccggacctgataaatgcgacgaagctcgagtcggagggtggca
# caggtggtgcgtataaattttgggagtggactgagcagcaaatcaaggactatatttga]
# protein sequence = [MYGPVVRIAPNHLSFTDPRAWKDIYYHRVGAVGGMVEMAKSTEFTRNVKGQLTTIVNADQDEHQQLRRALSHGFSDSS
# MRQQEPTMLKHINMLVDRLRTESGKNPDMAAWYNWTTFDLSSDLIFGESFHCLQTVNYHPWVATIMKAIKFHAFMVALGYGGARPLVELIHKAGGFLA
# MKTMRGYIDSMLKSRLAMKQRHDDLFEGLAKRRDEWSPFFRGYLLDKLSVNATVLLLAGSETTATCLSGTTYFLLTHPEVLEKVTAEIRSAFSTDADI
# NIQSVNKLTYLIPVLNESLRMYPPLTSGMVREVPTGGAEIAGRFVPGDTLVEIQHWSINHSKENWVDPWSFRPERFMVDVKVAKEHSDMLEAVQAFSM
# GPRNCIGRNLAMTEMRLILAKILYNFDMKLANGSHSWIERQKNYNVKLLSKNSIAKFYMGTVPVYLISGTKHIQSIFGRDNKVGSEEIFTQAVLPTLY
# KMPKSHVERFANDKSGRGHVPAPGTEGTPKEQRYWARYEQIHTEYLARTQHLKPIIQAYSNQLAHDLNKYPLEKWTTLGVVETCRREVTKCAMSTLLG
# PKVFELDPDFLDTFWEFDHNVFMLTLGFPKWLNPGPYNAQDKYLSTIERYVHAAWDNFDWNGPDAESSWEPHFGARVCREIAKWFKESGFPDVSISGA
# LGTLLFAQNSNTIPTTMWMILRIFQDSCLLQAVREEVATTYSIDPVTGEHICDIQKLVVLPLLQSVFTEVLRLHMNFNIIRHAKENITMDGYNIRKGA
# MLQVPMMAAHYEESVWGSSGHPASEFWAERHIKYVEDTKEDGKTERRRVFAMAGRPSSYFPFGGGPPVCPGRHFAKHEILTTIGMLVSKFDIEVVKWV
# KLDGSPSDRPAQNNQTYCGAGTMPPDREMKIRIKRLCTWASFRPPKPEFTEKNVPSLEGKVYLVTGSNTGVGKETARILYSKGAKVWMAARSTEKASV
# AIDEIRNSQPSSTGSLHFLHLDLSDLSTVKQSAELFLSQEQTLHVLFNNAGVMVGTPEATNTVQGHELALGVNCIGTHLFTRLVTALLAKTAKSEPEG
# SVRVIWLSSFGLELFGAENVGVALDNLDYHEPKPATERYGISKCGAWALGVEYARRHKADGIVSVPINPGNLTSELARDQPAALKAIVKVVGYPPIMG
# AYTELFAALSPEITLEKSGEWVAPFGRFYPLRPDLINATKLESEGGTGGAYKFWEWTEQQIKDYI]
42 AUGUSTUS transcript 9547 11216 0.06 - . g3.t2
42 AUGUSTUS stop_codon 9547 9549 . - 0 transcript_id "g3.t2"; gene_id "g3";
42 AUGUSTUS terminal 9547 9709 0.41 - 1 transcript_id "g3.t2"; gene_id "g3";
42 AUGUSTUS internal 9787 9962 0.85 - 0 transcript_id "g3.t2"; gene_id "g3";
42 AUGUSTUS internal 10051 10353 0.65 - 0 transcript_id "g3.t2"; gene_id "g3";
42 AUGUSTUS internal 10496 10522 0.33 - 0 transcript_id "g3.t2"; gene_id "g3";
42 AUGUSTUS initial 10581 11216 0.33 - 0 transcript_id "g3.t2"; gene_id "g3";
42 AUGUSTUS intron 9710 9786 0.82 - . transcript_id "g3.t2"; gene_id "g3";
42 AUGUSTUS intron 9963 10050 0.97 - . transcript_id "g3.t2"; gene_id "g3";
42 AUGUSTUS intron 10354 10495 0.44 - . transcript_id "g3.t2"; gene_id "g3";
42 AUGUSTUS intron 10523 10580 0.33 - . transcript_id "g3.t2"; gene_id "g3";
42 AUGUSTUS CDS 9550 9709 0.41 - 1 transcript_id "g3.t2"; gene_id "g3";
42 AUGUSTUS CDS 9787 9962 0.85 - 0 transcript_id "g3.t2"; gene_id "g3";
42 AUGUSTUS CDS 10051 10353 0.65 - 0 transcript_id "g3.t2"; gene_id "g3";
42 AUGUSTUS CDS 10496 10522 0.33 - 0 transcript_id "g3.t2"; gene_id "g3";
42 AUGUSTUS CDS 10581 11216 0.33 - 0 transcript_id "g3.t2"; gene_id "g3";
42 AUGUSTUS start_codon 11214 11216 . - 0 transcript_id "g3.t2"; gene_id "g3";
# coding sequence = [atgtatgggccggttgtgcgcattgcgcccaaccacctctcattcaccgatccacgggcatggaaggatatttattacc
# accgtgttggggctgtaggtggtatggtggaaatggccaagtctaccgagttcacgcgaaatgtcaaaggccaacttaccaccattgttaatgccgac
# caagacgaacatcaacaactgagacgagcgctttctcatggcttctcggacagctccatgagacagcaagaacccaccatgctcaaacacataaacat
# gctagtggatagactacgaacggagtctggcaaaaatccggatatggcggcatggtataactggacaacctttgacctctcgagtgatctgatttttg
# gagagtcgttccattgtcttcaaacagtcaattatcacccatgggttgctactatcatgaaggctatcaagtttcatgcgttcatggtagctctaggt
# tatggcggtgctaggccgctggtcgaattgatccacaaagccggtggatttctcgcgatgaaaacaatgcgcggttatatcgatagtatgctaaagtc
# aaggctggcaatgaagcaaaggcatgatgacctttttgaaggtttggctaaaagacgagatgaatggtctccattctttaggggctatcttttggata
# aactcagcgtgaatgccactgtcctactcctagctggctccgaaaccactgcaacttgtctatctggcacaacctatttccttctgacgcatccagag
# gtcttggagaaggtgaccgcggagatcagatctgccttctcaacagacgcggatataaatattcaatcagtaaacaaattgacatacttgattcctgt
# attaaacgaatctttgcgaatgtacccacctttgacctctggaatggtgcgagaagtccctacaggaggtgctgagatcgcagggcgattcgttcccg
# gtgataccctagttgagatccaacattggtcgataaatcacagcaaggagaactgggtcgacccttggtcgtttcgccctgaacgttttatggtggat
# gtcaaagtagccaaggaacacagtgatatgttggaagccgttcaagcatttagcatgggaccgcggaattgcatcggaagaaatcttgcaatgacgga
# aatgcgtcttatcttggctaagattctctataattttgatatgaaacttgcgaatggcagccatagctggatcgagaggcagaagaattacaacgtgt
# gggatcggataccattgaatgtgactttaacgcccgtcgaagtgaaatag]
# protein sequence = [MYGPVVRIAPNHLSFTDPRAWKDIYYHRVGAVGGMVEMAKSTEFTRNVKGQLTTIVNADQDEHQQLRRALSHGFSDSS
# MRQQEPTMLKHINMLVDRLRTESGKNPDMAAWYNWTTFDLSSDLIFGESFHCLQTVNYHPWVATIMKAIKFHAFMVALGYGGARPLVELIHKAGGFLA
# MKTMRGYIDSMLKSRLAMKQRHDDLFEGLAKRRDEWSPFFRGYLLDKLSVNATVLLLAGSETTATCLSGTTYFLLTHPEVLEKVTAEIRSAFSTDADI
# NIQSVNKLTYLIPVLNESLRMYPPLTSGMVREVPTGGAEIAGRFVPGDTLVEIQHWSINHSKENWVDPWSFRPERFMVDVKVAKEHSDMLEAVQAFSM
# GPRNCIGRNLAMTEMRLILAKILYNFDMKLANGSHSWIERQKNYNVWDRIPLNVTLTPVEVK]
# end gene g3
###
# start gene g4
42 AUGUSTUS gene 12697 14331 0.6 + . g4
42 AUGUSTUS transcript 12697 14331 0.45 + . g4.t1
42 AUGUSTUS start_codon 12697 12699 . + 0 transcript_id "g4.t1"; gene_id "g4";
42 AUGUSTUS initial 12697 13413 0.76 + 0 transcript_id "g4.t1"; gene_id "g4";
42 AUGUSTUS internal 13522 13836 0.92 + 0 transcript_id "g4.t1"; gene_id "g4";
42 AUGUSTUS internal 13929 14095 0.6 + 0 transcript_id "g4.t1"; gene_id "g4";
42 AUGUSTUS terminal 14175 14331 0.7 + 1 transcript_id "g4.t1"; gene_id "g4";
42 AUGUSTUS intron 13414 13521 0.78 + . transcript_id "g4.t1"; gene_id "g4";
42 AUGUSTUS intron 13837 13928 0.8 + . transcript_id "g4.t1"; gene_id "g4";
42 AUGUSTUS intron 14096 14174 0.69 + . transcript_id "g4.t1"; gene_id "g4";
42 AUGUSTUS CDS 12697 13413 0.76 + 0 transcript_id "g4.t1"; gene_id "g4";
42 AUGUSTUS CDS 13522 13836 0.92 + 0 transcript_id "g4.t1"; gene_id "g4";
42 AUGUSTUS CDS 13929 14095 0.6 + 0 transcript_id "g4.t1"; gene_id "g4";
42 AUGUSTUS CDS 14175 14328 0.7 + 1 transcript_id "g4.t1"; gene_id "g4";
42 AUGUSTUS stop_codon 14329 14331 . + 0 transcript_id "g4.t1"; gene_id "g4";
# coding sequence = [atgaacaaaggaacacttgctttcgacgtgcttcctatgcataagaagtacggtcccgttgttcgaattgcgcctaacg
# aactctcctttcaaactccccaggcatggaaagatatttatggtcatcggaccggcaccgctgccggagctgaggaaatggacaagtatcatacattc
# taccgtaccaagggagaggttctcagcatcagctcaggaggtcgcgagtatcatggaattcttcgtcgtcaattagcatacggattcagcgaccgcgc
# catgcgcgagcaggagcctatcattggcagttacattgatttgctgatcaagagactccatgaaaactgcgttgatcccaacgtgaaggatcccaaga
# caggaaacccagcggagaaaatgctaaacatggtctcctggtacaattggaccacatttgatgtgattggtgatttggtctttggcgagtcctttgga
# tcgcttgaaaatggaaactatgacccttgggtagccgctatcaatgactctatcaaattccttggtgttatcaatggagtcaagcatatgggtcttga
# atctctgttcatttgggttgttaaaaaacttaataccggccgccgtgagcacacagatcgattggtcaagaagcttcagaaacgtatcaatctcggcg
# ttgagcgtttagacttgatcgaaggcttgctacagaagaaagatgaatggaacctatctattcaccaccttgaagccaacggaagtagcatcttgatt
# gccggttcagaaacaacagctacaatgttgagtggtgttacctatatgctccttacacacccagaggccctccgcaaagttaccaaagaagtgcgcac
# cactttcaagtccagcgaagagatcacattgacatctgtcagttctcttacgtatatgcttgcctgcttgaatgagtcactgcgtgcttaccctcctg
# tcccttttggcatgcctcgccaggttccaaagggcggagccaccattgccggagaatatgtcccagaagacaccgtcgtcgctatttggcactgggct
# gcctaccataacgaccagctatggaccgatccattcggctatcatccagagcgctatctccacgatcccagatttgctaatgatgcttttgcaatcca
# caatccattctcccacgggcccagaaattgcattggaagacatttggcatacgcagaaatgagacttgtattggcgcgcctccttttcgattttgaga
# tgcgtttggcagatcctgacttagactggttgaaccacaaatcttatgtgctgtggtcgaagccagctttgaacgtatatttgactcctcgtgaattt
# taa]
# protein sequence = [MNKGTLAFDVLPMHKKYGPVVRIAPNELSFQTPQAWKDIYGHRTGTAAGAEEMDKYHTFYRTKGEVLSISSGGREYHG
# ILRRQLAYGFSDRAMREQEPIIGSYIDLLIKRLHENCVDPNVKDPKTGNPAEKMLNMVSWYNWTTFDVIGDLVFGESFGSLENGNYDPWVAAINDSIK
# FLGVINGVKHMGLESLFIWVVKKLNTGRREHTDRLVKKLQKRINLGVERLDLIEGLLQKKDEWNLSIHHLEANGSSILIAGSETTATMLSGVTYMLLT
# HPEALRKVTKEVRTTFKSSEEITLTSVSSLTYMLACLNESLRAYPPVPFGMPRQVPKGGATIAGEYVPEDTVVAIWHWAAYHNDQLWTDPFGYHPERY
# LHDPRFANDAFAIHNPFSHGPRNCIGRHLAYAEMRLVLARLLFDFEMRLADPDLDWLNHKSYVLWSKPALNVYLTPREF]
42 AUGUSTUS transcript 12697 14099 0.15 + . g4.t2
42 AUGUSTUS start_codon 12697 12699 . + 0 transcript_id "g4.t2"; gene_id "g4";
42 AUGUSTUS initial 12697 13413 0.76 + 0 transcript_id "g4.t2"; gene_id "g4";
42 AUGUSTUS internal 13522 13836 0.92 + 0 transcript_id "g4.t2"; gene_id "g4";
42 AUGUSTUS terminal 13929 14099 0.2 + 0 transcript_id "g4.t2"; gene_id "g4";
42 AUGUSTUS intron 13414 13521 0.78 + . transcript_id "g4.t2"; gene_id "g4";
42 AUGUSTUS intron 13837 13928 0.8 + . transcript_id "g4.t2"; gene_id "g4";
42 AUGUSTUS CDS 12697 13413 0.76 + 0 transcript_id "g4.t2"; gene_id "g4";
42 AUGUSTUS CDS 13522 13836 0.92 + 0 transcript_id "g4.t2"; gene_id "g4";
42 AUGUSTUS CDS 13929 14096 0.2 + 0 transcript_id "g4.t2"; gene_id "g4";
42 AUGUSTUS stop_codon 14097 14099 . + 0 transcript_id "g4.t2"; gene_id "g4";
# coding sequence = [atgaacaaaggaacacttgctttcgacgtgcttcctatgcataagaagtacggtcccgttgttcgaattgcgcctaacg
# aactctcctttcaaactccccaggcatggaaagatatttatggtcatcggaccggcaccgctgccggagctgaggaaatggacaagtatcatacattc
# taccgtaccaagggagaggttctcagcatcagctcaggaggtcgcgagtatcatggaattcttcgtcgtcaattagcatacggattcagcgaccgcgc
# catgcgcgagcaggagcctatcattggcagttacattgatttgctgatcaagagactccatgaaaactgcgttgatcccaacgtgaaggatcccaaga
# caggaaacccagcggagaaaatgctaaacatggtctcctggtacaattggaccacatttgatgtgattggtgatttggtctttggcgagtcctttgga
# tcgcttgaaaatggaaactatgacccttgggtagccgctatcaatgactctatcaaattccttggtgttatcaatggagtcaagcatatgggtcttga
# atctctgttcatttgggttgttaaaaaacttaataccggccgccgtgagcacacagatcgattggtcaagaagcttcagaaacgtatcaatctcggcg
# ttgagcgtttagacttgatcgaaggcttgctacagaagaaagatgaatggaacctatctattcaccaccttgaagccaacggaagtagcatcttgatt
# gccggttcagaaacaacagctacaatgttgagtggtgttacctatatgctccttacacacccagaggccctccgcaaagttaccaaagaagtgcgcac
# cactttcaagtccagcgaagagatcacattgacatctgtcagttctcttacgtatatgcttgcctgcttgaatgagtcactgcgtgcttaccctcctg
# tcccttttggcatgcctcgccaggttccaaagggcggagccaccattgccggagaatatgtcccagaagacaccgtcgtcgctatttggcactgggct
# gcctaccataacgaccagctatggaccgatccattcggctatcatccagagcgctatctccacgatcccagatttgctaatgatgcttttgcaatcca
# caatccattctcccacgggcccagaaattgcattggaagacagtaa]
# protein sequence = [MNKGTLAFDVLPMHKKYGPVVRIAPNELSFQTPQAWKDIYGHRTGTAAGAEEMDKYHTFYRTKGEVLSISSGGREYHG
# ILRRQLAYGFSDRAMREQEPIIGSYIDLLIKRLHENCVDPNVKDPKTGNPAEKMLNMVSWYNWTTFDVIGDLVFGESFGSLENGNYDPWVAAINDSIK
# FLGVINGVKHMGLESLFIWVVKKLNTGRREHTDRLVKKLQKRINLGVERLDLIEGLLQKKDEWNLSIHHLEANGSSILIAGSETTATMLSGVTYMLLT
# HPEALRKVTKEVRTTFKSSEEITLTSVSSLTYMLACLNESLRAYPPVPFGMPRQVPKGGATIAGEYVPEDTVVAIWHWAAYHNDQLWTDPFGYHPERY
# LHDPRFANDAFAIHNPFSHGPRNCIGRQ]
# end gene g4
###
# start gene g5
42 AUGUSTUS gene 15265 16021 0.98 - . g5
42 AUGUSTUS transcript 15265 16021 0.98 - . g5.t1
42 AUGUSTUS stop_codon 15265 15267 . - 0 transcript_id "g5.t1"; gene_id "g5";
42 AUGUSTUS terminal 15265 15708 0.98 - 0 transcript_id "g5.t1"; gene_id "g5";
42 AUGUSTUS internal 15771 15830 1 - 0 transcript_id "g5.t1"; gene_id "g5";
42 AUGUSTUS internal 15898 15921 1 - 0 transcript_id "g5.t1"; gene_id "g5";
42 AUGUSTUS initial 15986 16021 1 - 0 transcript_id "g5.t1"; gene_id "g5";
42 AUGUSTUS intron 15709 15770 1 - . transcript_id "g5.t1"; gene_id "g5";
42 AUGUSTUS intron 15831 15897 1 - . transcript_id "g5.t1"; gene_id "g5";
42 AUGUSTUS intron 15922 15985 1 - . transcript_id "g5.t1"; gene_id "g5";
42 AUGUSTUS CDS 15268 15708 0.98 - 0 transcript_id "g5.t1"; gene_id "g5";
42 AUGUSTUS CDS 15771 15830 1 - 0 transcript_id "g5.t1"; gene_id "g5";
42 AUGUSTUS CDS 15898 15921 1 - 0 transcript_id "g5.t1"; gene_id "g5";
42 AUGUSTUS CDS 15986 16021 1 - 0 transcript_id "g5.t1"; gene_id "g5";
42 AUGUSTUS start_codon 16019 16021 . - 0 transcript_id "g5.t1"; gene_id "g5";
# coding sequence = [atgatgactttggatcttgagagacaactcgtcttttatggcacttaccaccataatccggtcaatgtccggatacaca
# tgatcttcgttcccgtcatcctcataaccagtattcaattgttcaccaacacaccaacgctcatccccctgccggactttcttcaatacaaatacctc
# cctctcaacgccggcacaatccaatccctaatctacgccctgggctacatcctcctcgagccggtcgtcggtctgatatgcgttcctactctgctggg
# tgccgccgcctacatgaattacctcacaatgacctacggcgcgactgctacatcctggtccttcggaatctttatcgtgtcatggattgctcagttta
# ttggccatggagcctacgagggacgatcgccggctttgttggataatcttttccaggcgctgtttttggcgccgttgtttgtgtttttggagtatttg
# tttatgtttgggtatcggccggagttgcagcggagggtcgaggcggaggtgcagaagaagcttgcgcagttgaacacgccgaagaacaagtga]
# protein sequence = [MMTLDLERQLVFYGTYHHNPVNVRIHMIFVPVILITSIQLFTNTPTLIPLPDFLQYKYLPLNAGTIQSLIYALGYILL
# EPVVGLICVPTLLGAAAYMNYLTMTYGATATSWSFGIFIVSWIAQFIGHGAYEGRSPALLDNLFQALFLAPLFVFLEYLFMFGYRPELQRRVEAEVQK
# KLAQLNTPKNK]
# end gene g5
###
# start gene g6
42 AUGUSTUS gene 17133 17881 0.88 + . g6
42 AUGUSTUS transcript 17133 17754 0.6 + . g6.t1
42 AUGUSTUS start_codon 17133 17135 . + 0 transcript_id "g6.t1"; gene_id "g6";
42 AUGUSTUS initial 17133 17381 1 + 0 transcript_id "g6.t1"; gene_id "g6";
42 AUGUSTUS internal 17440 17690 0.96 + 0 transcript_id "g6.t1"; gene_id "g6";
42 AUGUSTUS terminal 17745 17754 0.6 + 1 transcript_id "g6.t1"; gene_id "g6";
42 AUGUSTUS intron 17382 17439 1 + . transcript_id "g6.t1"; gene_id "g6";
42 AUGUSTUS intron 17691 17744 0.6 + . transcript_id "g6.t1"; gene_id "g6";
42 AUGUSTUS CDS 17133 17381 1 + 0 transcript_id "g6.t1"; gene_id "g6";
42 AUGUSTUS CDS 17440 17690 0.96 + 0 transcript_id "g6.t1"; gene_id "g6";
42 AUGUSTUS CDS 17745 17751 0.6 + 1 transcript_id "g6.t1"; gene_id "g6";
42 AUGUSTUS stop_codon 17752 17754 . + 0 transcript_id "g6.t1"; gene_id "g6";
# coding sequence = [atgttcttcctcaaagaggaaaccaaagtcgtcaccctccacccgtcctttttcggacccaatgtcaaggaatatctga
# tcaaccgcttgaacgaagaagaagagggacgatgtacgggtgatcatttcgtgatttgtgtcatggacatggtggatattggcgacgggcgagtgata
# ccgggcagtggacatgcagaatatactatcaaatatcgcgcgatcatatggaagcctttccgaggggagacggtcgatgccatcgtgacctcggttaa
# acccaccggtatcttcacgctcgcgggccctctgtcggtgtttattgcgcgcaaaaatataccatcagatatcaaatgggaacccggcaccgtgccgc
# cccaatatacggatcatgcagaccaggttattgagcgaggaacgagtctgcggttgaagatactgggtgtgaagccagatgtgtctgcgattaatgcg
# attggcaccattaaggaggattatcttggcaccctctaa]
# protein sequence = [MFFLKEETKVVTLHPSFFGPNVKEYLINRLNEEEEGRCTGDHFVICVMDMVDIGDGRVIPGSGHAEYTIKYRAIIWKP
# FRGETVDAIVTSVKPTGIFTLAGPLSVFIARKNIPSDIKWEPGTVPPQYTDHADQVIERGTSLRLKILGVKPDVSAINAIGTIKEDYLGTL]
42 AUGUSTUS transcript 17133 17881 0.28 + . g6.t2
42 AUGUSTUS start_codon 17133 17135 . + 0 transcript_id "g6.t2"; gene_id "g6";
42 AUGUSTUS initial 17133 17381 1 + 0 transcript_id "g6.t2"; gene_id "g6";
42 AUGUSTUS internal 17440 17690 0.96 + 0 transcript_id "g6.t2"; gene_id "g6";
42 AUGUSTUS terminal 17734 17881 0.28 + 1 transcript_id "g6.t2"; gene_id "g6";
42 AUGUSTUS intron 17382 17439 1 + . transcript_id "g6.t2"; gene_id "g6";
42 AUGUSTUS intron 17691 17733 0.28 + . transcript_id "g6.t2"; gene_id "g6";
42 AUGUSTUS CDS 17133 17381 1 + 0 transcript_id "g6.t2"; gene_id "g6";
42 AUGUSTUS CDS 17440 17690 0.96 + 0 transcript_id "g6.t2"; gene_id "g6";
42 AUGUSTUS CDS 17734 17878 0.28 + 1 transcript_id "g6.t2"; gene_id "g6";
42 AUGUSTUS stop_codon 17879 17881 . + 0 transcript_id "g6.t2"; gene_id "g6";
# coding sequence = [atgttcttcctcaaagaggaaaccaaagtcgtcaccctccacccgtcctttttcggacccaatgtcaaggaatatctga
# tcaaccgcttgaacgaagaagaagagggacgatgtacgggtgatcatttcgtgatttgtgtcatggacatggtggatattggcgacgggcgagtgata
# ccgggcagtggacatgcagaatatactatcaaatatcgcgcgatcatatggaagcctttccgaggggagacggtcgatgccatcgtgacctcggttaa
# acccaccggtatcttcacgctcgcgggccctctgtcggtgtttattgcgcgcaaaaatataccatcagatatcaaatgggaacccggcaccgtgccgc
# cccaatatacggatcatgcagaccaggttattgagcgaggaacgagtctgcggttgaagatactgggtgtgaagccagatgtgtctgcgattaatgcg
# attggcaccattaaggaggattatcttggttttacgatagcaccctctaaggttccttcactatttatagagaatcgtctccctcagcactcgatgat
# gccgaatttctacccgcgactgccctacgaagaatggcggcgtatatgcctggttctgcgagtgttcgacaacaagtga]
# protein sequence = [MFFLKEETKVVTLHPSFFGPNVKEYLINRLNEEEEGRCTGDHFVICVMDMVDIGDGRVIPGSGHAEYTIKYRAIIWKP
# FRGETVDAIVTSVKPTGIFTLAGPLSVFIARKNIPSDIKWEPGTVPPQYTDHADQVIERGTSLRLKILGVKPDVSAINAIGTIKEDYLGFTIAPSKVP
# SLFIENRLPQHSMMPNFYPRLPYEEWRRICLVLRVFDNK]
# end gene g6
###
# start gene g7
42 AUGUSTUS gene 19088 20001 0.87 + . g7
42 AUGUSTUS transcript 19088 20001 0.87 + . g7.t1
42 AUGUSTUS start_codon 19088 19090 . + 0 transcript_id "g7.t1"; gene_id "g7";
42 AUGUSTUS initial 19088 19396 0.93 + 0 transcript_id "g7.t1"; gene_id "g7";
42 AUGUSTUS internal 19460 20001 0.94 + 0 transcript_id "g7.t1"; gene_id "g7";
42 AUGUSTUS intron 19397 19459 0.92 + . transcript_id "g7.t1"; gene_id "g7";
42 AUGUSTUS CDS 19088 19396 0.93 + 0 transcript_id "g7.t1"; gene_id "g7";
42 AUGUSTUS CDS 19460 20001 0.94 + 0 transcript_id "g7.t1"; gene_id "g7";
# coding sequence = [atggcgctcaaagcagtctacgagcgattcctctcctccccaacctctggcgccctgagcgccgatgtctcagtcaact
# acatcacgacggcaacctcaatcacgggcagcgaacaggtcctcaagcatctgagtaaccaggagaaggcagtcaagaaaaagggagacaagatcctc
# ggcatcgtcgagactccggatactattgtcctggacgtggagactacactggagtttgtgactgggggtggggcttatctgccctcgctggacgataa
# tttcctagccgaccgcgtagtgacttttcccacgatacacattgttcacttcaattcgcaatcccagatccaacaggtcagagtctattgggaccagg
# gttcgctcttgaaacaagtcgacgtcatcggttctcgtggaaagaattggcccattcgcgatgctaaggatcagtcgaagttgattgccaatgtagca
# actgcacagggtatcaccacacccccgccccaaaaacaggtccccgtcgcagttggaaaagcgcctggttcgtctagacctccttcgcgctcgcccag
# cgagatttttggcggcagtgatgacgttgagaacgagcccactcctcgcgctcgcgatagcatcatttcgcctcgagctggcgctgcgaagcacttcc
# gacctgtccgtgtttttggtgaagacgatgaagatgtcacttcaagccccatcaagcccaagattggttcgaacaagggattccaacccgtgcgcgta
# ttcgacgtagagcaacatgaagccgaagtcgctcagcagccacgagccggagcgactaagaacttccaacccatccgtgtcttcga]
# protein sequence = [MALKAVYERFLSSPTSGALSADVSVNYITTATSITGSEQVLKHLSNQEKAVKKKGDKILGIVETPDTIVLDVETTLEF
# VTGGGAYLPSLDDNFLADRVVTFPTIHIVHFNSQSQIQQVRVYWDQGSLLKQVDVIGSRGKNWPIRDAKDQSKLIANVATAQGITTPPPQKQVPVAVG
# KAPGSSRPPSRSPSEIFGGSDDVENEPTPRARDSIISPRAGAAKHFRPVRVFGEDDEDVTSSPIKPKIGSNKGFQPVRVFDVEQHEAEVAQQPRAGAT
# KNFQPIRVF]
# end gene g7
###
# command line:
# /data/www/augustus/augustus/bin/augustus --species=aspergillus_fumigatus --strand=both --singlestrand=false --genemodel=partial --codingseq=on --sample=100 --keep_viterbi=true --alternatives-from-sampling=true --minexonintronprob=0.2 --minmeanexonintronprob=0.5 --maxtracks=2 /data/www/augustus/webservice/data/AUG-193441470/input.fa --exonnames=on